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Networks in Biological Sciences
(1 June - 31 July 2015)

Jointly organized with Department of Mathematics, NUS

Organizing Committee · Visitors and Participants · Overview · Activities · Venue

 

Visitors and Participants

NAME & AFFILIATION

PERIOD OF VISIT

TENTATIVE TITLE OF TALK

OVERSEAS VISITORS

   

Tatsuya Akutsu
Kyoto University, Japan
takutsu(AT)kuicr.kyoto-u.ac.jp

7 - 13 Jun 2015

Minimum dominating set approach to analysis and control of biological networks

(PDF)

Miguel Andrade
Johannes-Gutenberg University of Mainz, Germany
Andrade(AT)uni-mainz.de

8 - 13 Jun 2015

Data and text mining applied to the computational study of protein interaction networks

(PDF)

Mukul Bansal
University of Connecticut, USA
mukul(AT)engr.uconn.edu

26 - 31 Jul 2015

Deciphering reticulate evolution using phylogenetic reconciliation

(PDF)

Eric Bapteste
Université Pierre et Marie Curie, Paris, France
epbapteste(AT)gmail.com

26 Jul - 1 Aug 2015

Apprehending life's complexity and its evolution with networks

(PDF)

Michael Brent
Washington University at St Louis, USA
brent(AT)wustl.edu

7 - 12 Jun 2015

Mapping and modeling gene regulatory networks

(PDF)

Ming Chen
Zhejiang University , China
mchen(AT)zju.edu.cn

7 - 14 Jun 2015

Organelle-focused proteomes and interactomes in rice

(PDF)

Phoebe Chen
La Trobe University, Australia
Phoebe.Chen(AT)latrobe.edu.au

7 - 10 Jun 2015

Computational developments in microRNA-regulated protein-protein interactions and pathways

(PDF)

Zhi-Zhong Chen
Tokyo Denki University, Japan
zzchen(AT)mail.dendai.ac.jp

26 Jul - 1 Aug 2015

A randomized approximation algorithm for rSPR Distance

(PDF)

Kwang-Hyun Cho
KAIST, South Korea
ckh(AT)kaist.ac.kr

7 - 9 Jun 2015

Hidden critical circuits in the human signaling network

Eduardo Corel
Université Pierre et Marie Curie, Paris, France
eduardo.corel(AT)upmc.fr

26 Jul - 1 Aug 2015

Large-scale study of genetic exchange through bipartite graphs

(PDF)

Bhaskar DasGupta
University of Illinois at Chicago, USA
bdasgup(AT)uic.edu

7 - 20 Jun 2015

Topological implications of negative curvature for biological networks

(PDF)

Nayan De
Indian Institure of Chemical Biology, India
nayanchemju1(AT)gmail.com

8 - 12 Jun 2015

Charlotte Deane
Oxford University, UK
deane(AT)stats.ox.ac.uk

7 - 13 Jun 2015

Extracting evolutionary and functional information from protein interaction networks

(PDF)

Minghua Deng
Peking University, China
dengmh(AT)math.pku.edu.cn

7 - 14 Jun 2015

Statistical methods for network analysis of biological data

Ranjan Dissanayake
Rajarata University, Sri Lanka
ranjand82(AT)gmail.com

1 Jun - 31 Jul 2015

Dannie Durand
Carnegie Mellon University, USA
durand(AT)cmu.edu

25 Jul - 1 Aug 2015

The evolution of the metazoan protein toolkit

Philippe Gambette
University of East Paris, France
philippe.gambette(AT)gmail.com

26 Jul - 1 Aug 2015

Exploring the phylogenetic network community

(PDF)

Stefan Gruenewald
CAS-MPG Partner Institute for Computational Biology, China
stefan(AT)picb.ac.cn

26 Jul - 1 Aug 2015

Computing split systems from weighted quartets

Daniel Gusfield
University of California at Davis, USA
gusfield(AT)cs.ucdavis.edu

26 Jul - 1 Aug 2015

Studying phylogenetic networks via integer linear programming (ILP)

(PDF)

Ravi Kumar Gutti
University of Hyderabad, India
grksl(AT)uohyd.ernet.in

1 - 14 Jun 2015

Jing-Dong Han, Jackie
CAS-MPG Partner Institute for Computational Biology, China
jdhan(AT)picb.ac.cn

8 - 12 Jun 2015

Integrative analysis of biological big data

Katharina Huber
University of East Anglia, UK
katharina.huber(AT)cmp.uea.ac.uk

25 Jul - 6 Aug 2015

Bridging the gap

(PDF)

Daniel Huson
University of Tubingen, Germany
huson(AT)informatik.uni-tuebingen.de

31 Jul 2015

Phylogenetic networks and software

Leo Van Iersel
Technische Universiteit Delft, The Netherlands
l.j.j.v.iersel(AT)gmail.com

25 Jul - 1 Aug 2015

Reconstructing phylogenetic level-1 networks from nondense binet and trinet sets

(PDF)

Jesper Jansson
Kyoto University, Japan
jj(AT)kuicr.kyoto-u.ac.jp

21 - 31 Jul 2015

Comparing phylogenetic networks by counting triangles

(PDF)

Anthony Labarre
University of East Paris, France
labarre.anthony(AT)gmail.com

26 - 31 Jul 2015

Jens Lagergren
KTH Royal Institute of Technology, Sweden
jensl(AT)csc.kth.se

26 Jul - 1 Aug 2015

Applications of the probabilistic species-tree aware approach

Ying-Cheng Lai
Arizona State University, USA
Ying-Cheng.Lai(AT)asu.edu

8 - 15 Jun 2015

Controlling nonlinear dynamics on complex networks

(PDF)

François-Joseph Lapointe
Université de Montréal, Canada
Francois-Joseph.Lapointe(AT)UMontreal.CA

27 Jul - 1 Aug 2015

A statistical framework to analyze complex metagenomic networks

(PDF)

Kui Lin
Beijing Normal University, China
linkui(AT)bnu.edu.cn

26 - 31 Jul 2015

Simone Linz
University of Auckland, New Zealand
s.linz(AT)auckland.ac.nz

23 - 31 Jul 2015

Cherry picking: a new characterization to quantify reticulation

(PDF)

Wanlin Liu
Academy of Military Medical Science, China
wanlin_liu(AT)126.com

7 - 13 Jun 2015

Philippe Lopez
Université Pierre et Marie Curie, Paris, France
philippe.lopez(AT)snv.jussieu.fr

26 Jul - 1 Aug 2015

Exploring environmental genetic diversity with similarity networks

(PDF)

Ali Masoudi-Nejad
University of Tehran, Iran
amasoudin(AT)ibb.ut.ac.ir

5 - 13 Jun 2015

Biological networks and network biology: a cancer story

(PDF)

James McInerney
National University of Ireland, Ireland
mcinerney.james(AT)gmail.com

26 Jul - 1 Aug 2015

Sequence similarity networks, n-rooted fusion graphs and lego diagrams: new tools for understanding evolution

(PDF)

David Morrison
Uppsala University, Sweden
David.Morrison(AT)ebc.uu.se

26 Jul - 1 Aug 2015

The biology of phylogenetic networks

(PDF)

Vincent Moulton
University of East Anglia, UK
vincent.moulton(AT)cmp.uea.ac.uk

25 Jul - 6 Aug 2015

Optimal trees and realizations from split networks

(PDF)

Luay K. Nakhleh
Rice University, USA
nakhleh(AT)rice.edu

25 Jul - 1 Aug 2015

Statistical inference of reticulate evolutionary histories of species

(PDF)

Xuying Nan
Zhejiang Science and Technology University, China
yaoyuhua2288(AT)163.com

21 - 31 Jul 2015

Junalyn Navarra-Madsen
Texas Woman's University, USA
JNavarraMadsen(AT)mail.twu.edu

1 - 15 Jun 2015

Yen Kaow Ng
Universiti Tunku Abdul Rahman, Malaysia
ykng(AT)utar.edu.my

22 - 31 Jul 2015

Erli Pang
Beijing Normal University, China
pangerli(AT)bnu.edu.cn

26 Jul - 1 Aug 2015

Nirmala Parisutham
PSG College of Technology Coimbatore, India
pna(AT)mca.psgtech.ac.in

20 Jul - 1 Aug 2015

Mason Porter
Oxford University, UK
porterm(AT)maths.ox.ac.uk

7 - 13 Jun 2015

Community structure and multilayer networks (and a few protein interactions)

Kaushalya Premachandra
Rajarata University of Sri Lanka, Sri Lanka
kaush197824(AT)gmail.com

1 Jun - 31 Jul 2015

Lekshmi R S
PSG College of Technology Coimbatore, India
rsl(AT)mca.psgtech.ac.in

20 Jul - 1 Aug 2015

Gesine Reinert
Oxford University, UK
reinert(AT)stats.ox.ac.uk

1 - 6 Jun 2015

Stéphane Robin
Agro ParisTech, France
robin(AT)agroparistech.fr

8 - 14 Jun 2015

Some statistical aspects of the W-graph model

(PDF)

Céline Scornavacca
Université Montpellier II, France
celine.scornavacca(AT)univ-montp2.fr

20 Jul - 1 Aug 2015

Kernelizations for the hybridization number problem on multiple nonbinary trees


Practical session:

Phylogenetic network analysis

Balaji Seetharaman
Manipal Institute of Technology - Manipal University, India
biobalagi(AT)gmail.com

21 Jul - 1 Aug 2015

Sophie Seidel
University of Tuebingen, Germany
sophie.seidel(AT)student.uni-tuebingen.de

1 Jun - 31 Jul 2015

Charles Semple
University of Canterbury, New Zealand
charles.semple(AT)canterbury.ac.nz

21 - 31 Jul 2015

Counting phylogenetic networks

(PDF)


Tutorial:

Phylogenetic networks I: Combinatorial aspects

(PDF 1)


Tutorial:

Phylogenetic networks II: Enumerative and algorithmic aspects

(PDF 2)

Roded Sharan
Tel-Aviv University, Israel
roded(AT)post.tau.ac.il

11 - 14 Jun 2015

Protein networks: from topology to logic

(PDF)

Wu Shiying
Albury Wodonga Health, Australia
shiyingwu9(AT)gmail.com

24 Jun - 28 Jul 2015

Mona Singh
Princeton University, USA
msingh(AT)cs.princeton.edu

8 - 12 Jun 2015

Data-driven approaches for uncovering variation in protein interaction networks

Sagi Snir
University of Haifa, Israel
ssagi(AT)research.haifa.ac.il

26 Jul - 1 Aug 2015

Studying horizontal gene transfer via quartet based methods

Hongtao Song
Beijing Normal University, China

26 Jul - 1 Aug 2015

Erik Sonnhammer
Stockholm Univeristy, Sweden
Erik.Sonnhammer(AT)scilifelab.se

8 - 12 Jun 2015

How to infer accurate gene regulatory networks from perturbations?

(PDF)

Mike Steel
University of Canterbury, New Zealand
mike.steel(AT)canterbury.ac.nz

25 - 31 Jul 2015

Mathematical aspects of phylogenetic networks

(PDF)

Eric Tannier
INRIA, France
Eric.Tannier(AT)inria.fr

27 Jul - 2 Aug 2015

Lateral gene transfer as a molecular clock

(PDF)

Stephane Vialette
University of East Paris, France
vialette(AT)univ-mlv.fr

25 Jul - 2 Aug 2015

Lusheng Wang
City University of Hong Kong, Hong Kong
lwang(AT)cs.cityu.edu.hk

24 Jul - 1 Aug 2015

Algorithms for pedigrees comparison

(PDF)

Christine Wells
University of Queensland, Australia
University of Glasgow, UK
c.wells(AT)uq.edu.au

7 - 12 Jun 2015

Integrative vs meta-analysis approaches to biological networks

Ernst Wit
University of Groningen, The Netherlands
e.c.wit(AT)rug.nl

7 - 13 Jun 2015

Inference of genomic network dynamics with non-linear ODEs

(PDF)

Qiong Wu
Chinese Academy of Sciences, China
qiongwu(AT)ibcas.ac.cn

25 Jul - 2 Aug 2015

Taoyang Wu
University of East Anglia, UK
TaoYang.Wu(AT)uea.ac.uk

23 - 31 Jul 2015

Information needed to infer phylogenetic networks

(PDF)

Yufeng Wu
University of Connecticut, USA
ywu(AT)engr.uconn.edu

27 Jul - 1 Aug 2015

Algorithms for constructing hybridization networks from multiple gene trees

(PDF)

Yuhua Yao
Zhejiang Science and Technology University, China
yaoyuhua2288(AT)163.com

21 - 31 Jul 2015

Shihua Zhang
Chinese Academy of Sciences, China
zsh(AT)amss.ac.cn

6 - 16 Jun 2015

Integrative analysis for identifying joint gene-drug modular patterns via network-based methods

Shuqin Zhang
Fudan University, China
zhangs(AT)fudan.edu.cn

7 - 13 Jun 2015

Multi-view spectral clustering with applications in gene coexpression networks

(PDF)

Yancong Zhang
College of Life Sciences, China
zhangyc201211(AT)gmail.com

26 Jul - 1 Aug 2015

Jun Zhu
Mount Sinai Hospital, USA
jun.zhu(AT)mssm.edu

1 - 10 Jun 2015

Compare GWAS candidates in multiple species using physiologically relevant networks

(PDF)


Tutorial:

Network biology for complex human diseases

(PDF 1, PDF 2, PDF 3, PDF 4, PDF 5, PDF 6)

Nadine Ziemert
University of Tuebingen, Germany
nadine.ziemert(AT)uni-tuebingen.de

27 - 31 Jul 2015

Diversity and evolution of secondary metabolite clusters in marine actinomycetes

(PDF)

LOCAL VISITORS

   

Naviyn Prabhu Balakrishnan
naviyn.b(AT)nus.edu.sg

24 Jul 2015

Biruhalem Taye Beyene
Agency for Science Technology and Research

Bora Buyukturk
National University of Singapore

Luo Chang
National University of Singapore

Xin Chen
Nanyang Technological University
chenxin(AT)ntu.edu.sg

1 Jun - 31 Jul 2015

Kwok Pui Choi
National University of Singapore
stackp(AT)nus.edu.sg

1 Jun - 31 Jul 2015

Comparing transcriptional regulatory networks of human cell types

(PDF)

Ket Hing Chong

Frank Eisenhaber
Bioinformatics Institute
franke(AT)bii.a-star.edu.sg

1 Jun - 31 Jul 2015

Xin-Yuan Fu
National University of Singapore
xin-yuan_fu(AT)nuhs.edu.sg

1 Jun - 31 Jul 2015

From Darwin to Hamilton and current omics: is there a molecular network for altruism?

Kagistia Hana
Translational Laboratory in Genetic Medicine, A*STAR
kagistia_hana_utami(AT)tlgm.a-star.edu.sg

Wenhao Jin
National University of Singapore

Konda Reddy Karnati
National University of Singapore
phakkr(AT)nus.edu.sg

22 - 31 Jul 2015

Alexander Kreuzer
National University of Singapore

Wee Chuan Lim
National University of Singapore

Michelle Lin
National University of Singapore
bchlkm(AT)nus.edu.sg

Tianhao Mu
National University of Singapore

Enrico Petretto
Duke-NUS Graduate Medical School
enrico.petretto(AT)duke-nus.edu.sg

1 Jun - 31 Jul 2015

Gene regulatory networks to identify new targets for disease - applications to type I diabetes, cell multinucleation and epilepsy

(PDF)

Iana Pyrogova
National University of Singapore
a0120176(AT)nus.edu.sg

Lakshminarayanan Samavedham
National University of Singapore,
chels(AT)nus.edu.sg

24 Jul 2015

Yilin Tay
Translational Laboratory in Genetic Medicine, A*STAR

Lisa Tucker-Kellogg
Duke-NUS Graduate Medical School
lisa.tucker-kellogg(AT)duke-nus.edu.sg

1 Jun - 31 Jul 2015

Bayesian Network Modelling of Cancer Response to the Drug LY303511

Chaolong Wang
Genome Institute of Singapore
wangcl(AT)gis.a-star.edu.sg

7 Jul 2015

Ancestry estimation and control of population structure in genetic association studies

Limsoon Wong
National University of Singapore
wongls(AT)comp.nus.edu.sg

1 Jun - 31 Jul 2015

Advancing clinical proteomics using protein complexes as a contextualization framework

(PDF)

Minzhu Xie
Nanyang Technological University

You Yan
National University of Singapore

Ting Yu
National University of Singapore
matyt(AT)nus.edu.sg

Louxin Zhang
National University of Singapore
matzlx(AT)nus.edu.sg

1 Jun - 31 Jul 2015

Phylogenetic networks with stable property

Wenbin Zhang
tslzw(AT)nus.edu.sg

24 Jul 2015

Jie Zheng
Nanyang Technological University
ZhengJie(AT)ntu.edu.sg

1 Jun - 31 Jul 2015

Knowledge-guided fuzzy logic network modeling to detect alterations in cancer signaling pathways

(PDF)

GRADUATE STUDENTS

   

Rosalio Jr. Artes
Mindanao State University, Philippines
rosaliojr.artes(AT)g.msuiit.edu.ph

6 - 15 Jun 2015

Abha Belorkar
National University of Singapore
a0120126(AT)nus.edu.sg

Lisa Borghini
Genome institute of Singapore
borghinil99(AT)gis.a-star.edu.sg

1 Jun - 31 Jul 2015

Huifen Cao
Beijing Normal University, China

26 Jul - 1 Aug 2015

Jinyu Chen
Chinese Academy of Science, China
chjy5637(AT)126.com

3 - 12 Jun 2015

Maurice Cheung
National University of Singapore
bchccym(AT)nus.edu.sg

1 Jun - 31 Jul 2015

Shuang Gao
National University of Singapore
gaoshuang2008(AT)hotmail.com

1 Jun - 31 Jul 2015

Andreas Dwi Maryanto Gunawan
National University of Singapore
a0054645(AT)u.nus.edu

1 Jun - 31 Jul 2015

Lokanand Koduru
National University of Singapore
lokanandk(AT)gmail.com

8 - 12 Jun 2015

Teck Por Lim
National University of Singapore
teckpor(AT)gmail.com

8 Jun - 31 Jul 2015

Chun-Hsiang Lin
National Tsing Hua University, Taiwan
h198861012(AT)gmail.com

2 - 9 Jun 2015

Peijiang Liu
Sun Yet-sen University, China
liupeijiang1990(AT)163.com

2 - 12 Jun 2015

Zhaoqi Liu
Chinese Academy of Science, China
liuzhaoqi(AT)amss.ac.cn

3 - 13 Jun 2015

Bingxin Lu
National University of Singapore
bingxin(AT)comp.nus.edu.sg

22 - 31 Jul 2015

Chang Luo
National University of Singapore
a0068369(AT)u.nus.edu

1 Jun - 31 Jul 2015

Cheng-Yu Ma
National Tsing Hua University, Taiwan
brainbear(AT)gmail.com

2 - 9 Jun 2015

Jananan Pathmanathan
Université Pierre et Marie Curie, Paris, France
jananan.pathmanathan(AT)etu.upmc.fr

26 Jul - 1 Aug 2015

Identification and study of composite genes in the environment

Huiling Peng
Zhejiang University, China
3120104647(AT)zju.edu.cn

23 Jul - 2 Aug 2015

Xin Peng
Fudan University, China
xpeng13(AT)fudan.edu.cn

1 - 14 Jun 2015

Rasoul Rajaei
Tarbiat Modares University, Iran
rasoul.rajaei(AT)gmail.com

1 Jun - 31 Jul 2015

Thibault Reigner
National University of Singapore
thibault.reigner(AT)supelec.fr

1 Jan - 31 Dec 2015

Jia Song
Beijing Normal University, China

26 Jul - 1 Aug 2015

Madhuresh Sumit
University of Michigan, USA
msumit(AT)umich.edu

8 - 12 Jun 2015

Mingchen Tan
National University of Singapore
n289219289(AT)gmail.com

1 Jun - 31 Jul 2015

Arjun Venkatesh Thilagaraj
Manipal Institute of Technology, India
misterdecent(AT)ymail.com

22 - 31 Jul 2015

Yu Wang
Fudan University, China
11300180137(AT)fudan.edu.cn

2 - 14 Jun 2015

Changjing Wu
Peking University, China
wcj(AT)pku.edu.cn

2 - 13 Jun 2015

Zhaona Wu
National University of Singapore
wendy.zhaona(AT)yahoo.com

1 - 10 Jun 2015

Feng Xu
The University of Hong Kong, China
bioinfo229(AT)gmail.com

7 - 14 Jun 2015

Hang Xu
The University of Hong Kong, China
qinghang.xu(AT)gmail.com

7 - 13 Jun 2015

Huili Yuan
Peking University, China
hlyuan(AT)pku.edu.cn

2 - 13 Jun 2015

Bowen Zhang
Beijing Normal University, China

26 Jul - 1 Aug 2015

Yincong Zhou
Zhejiang University, China
foxandzhou(AT)gmail.com

2 - 12 Jun 2015

Yunyi Zhou
Fudan University, China
13110840009(AT)fudan.edu.cn

2 - 14 Jun 2015

REGISTERED LOCAL PARTICIPANTS

   

Ali Ghezal
Bioinformatics Institute
ghezala(AT)intern.bii.a-star.edu.sg

3 - 5 Jun 2015

Yen Ling Koon
Nanyang Technological University
koonyenling(AT)gmail.com

1 Jun - 31 Jul 2015

Raphael Tze Chuen Lee
Bioinformatics Institute
lizijun(AT)yahoo.com

1 Jun - 31 Jul 2015

Amal Tiss
Bioinformatics Institute
amalt(AT)intern.bii.a-star.edu.sg

1 Jun - 31 Jul 2015

Makoto Yawata
National University of Singapore
paeym(AT)nus.edu.sg

1 Jun - 31 Jul 2015

 

 

Organizing Committee · Visitors and Participants · Overview · Activities · Venue

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