Institute for Mathematical Sciences                                        Programs & Activities



Online registration form




      Scientific aspects


The Protein Network Workshop

(8 - 12 Jun 2015)

Venue: IMS Auditorium (8 - 10 Jun, 11 Jun afternoon, 12 Jun 2015)

Venue: Blk S17, #04-06, SR1, Department of Mathematics, NUS (11 Jun 2015 morning)

Jointly organized with Department of Mathematics, NUS

Organizing Committee · Visitors and Participants · Overview · Activities · Venue


Monday, 8 Jun 2015

08:45am - 09:00am


09:00am - 09:15am

Opening Remarks

Chi-tat Chong, Director of Institute for Mathematical Sciences

09:15am - 10:15am

Mapping and modeling gene regulatory networks (PDF)
Michael Brent, Washington University at St Louis, USA

10:15am - 10:45am

--- Group Photo & Coffee Break ---

10:45am - 11:45am

Advancing clinical proteomics using protein complexes as a contextualization framework (PDF)
Limsoon Wong, National University of Singapore

11:45am - 12:30pm

Multi-view spectral clustering with applications in gene coexpression networks (PDF)
Shuqin Zhang, Fudan University, China

12:30pm - 02:00pm

--- Lunch Reception at IMS ---

02:00pm - 02:45pm

Computational developments in microRNA-regulated protein-protein interactions and pathways (PDF)
Phoebe Chen, La Trobe University, Australia

02:45pm - 03:30pm

Integrative vs meta-analysis approaches to biological networks (PDF)
Christine Wells, University of Queensland, Australia and University of Glasgow, UK

03:30pm - 03:50pm

--- Coffee Break ---

03:50pm - 04:50pm

Hidden critical circuits in the human signaling network
Kwang-Hyun Cho, KAIST, South Korea

04:50pm - 05:35pm

Gene regulatory networks to identify new targets for disease - applications to type I diabetes, cell multinucleation and epilepsy (PDF)
Enrico Petretto, Duke-NUS Graduate Medical School

Tuesday, 9 Jun 2015

09:00am - 10:00am

Integrative analysis of biological big data
Jing-Dong Han Jackie, CAS-MPG Partner Institute for Computational Biology, China

10:00am - 11:00am

Data-driven approaches for uncovering variation in protein interaction networks
Mona Singh, Princeton University, USA

11:00am - 11:20am

--- Coffee Break ---

11:20am - 12:05pm

Comparing transcriptional regulatory networks of human cell types (PDF)
Kwok Pui Choi, National University of Singapore

12.05pm - 01:30pm

--- Lunch ---

01:30pm - 02:15pm

Compare GWAS candidates in multiple species using physiologically relevant networks (PDF)
Jun Zhu, Mount Sinai Hospital, USA

02:15pm - 03:00pm

Organelle-focused proteomes and interactomes in rice (PDF)
Ming Chen, Zhejiang University, China

03:00pm - 03:15pm

--- Coffee Break ---


Dinner (Volunteer and self paid)
Venue: Red House Seafood Restaurant
#01-14 The Quayside, 60 Robertson Quay, Singapore 238252

Wednesday, 10 Jun 2015

09:00am - 10:00am

Controlling nonlinear dynamics on complex networks (PDF)
Ying-Cheng Lai, Arizona State University, USA

10:00am - 10:45am

Local controllability of complex networks (PDF)
Louxin Zhang, National University of Singapore

10:45am - 11:00am

--- Coffee Break ---

11:00am - 12:00nn

Minimum dominating set approach to analysis and control of biological networks (PDF)
Tatsuya Akutsu, Kyoto University, Japan

12.00nn - 01:30pm

--- Lunch ---


Free & Easy

Thursday, 11 Jun 2015

Venue : Blk S17, #04-06, SR1, Department of Mathematics, NUS

08:30am - 09:30am

How to infer accurate gene regulatory networks from perturbations? (PDF)
Erik Sonnhammer, Stockholm Univeristy, Sweden

09:30am - 10:15am

Some statistical aspects of the W-graph model (PDF)
Stéphane Robin, Agro ParisTech, France

10:15am - 10:40am

--- Coffee Break ---

10:40am - 11:40am

Extracting evolutionary and functional information from protein interaction networks (PDF)

Charlotte Deane, Oxford University, UK

11.40am - 12:25pm

Statistical methods for network analysis of biological data (PDF)
Minghua Deng, Peking University, China

12:25pm - 02:00pm

--- Lunch ---

Venue : IMS Auditorium

02:00pm - 02:45pm

Inference of genomic network dynamics with non-linear ODEs (PDF)
Ernst Wit, University of Groningen, The Netherlands

02:45pm - 03:30pm

Integrative analysis for identifying joint gene-drug modular patterns via network-based methods
Shihua Zhang, Chinese Academy of Sciences, China

03:30pm - 03:45pm

--- Coffee Break ---

03:45pm - 04:30pm

Topological implications of negative curvature for biological networks (PDF)
Bhaskar DasGupta, University of Illinois at Chicago, USA

04:30pm - 05:30pm


Friday, 12 Jun 2015

09:00am - 10:00am

Community structure and multilayer networks (and a few protein interactions)
Mason Porter, Oxford University, UK

10:00am - 10:45am

Knowledge-guided fuzzy logic network modeling to detect alterations in cancer signaling pathways (PDF)
Jie Zheng, Nanyang Technological University

10:45am - 11:05am

--- Coffee Break ---

11:05am - 12:05pm

Protein networks: from topology to logic (PDF)
Roded Sharan, Tel-Aviv University, Israel

12:05pm - 01:30pm

--- Lunch ---

01.30pm - 02:15pm

Bayesian Network Modelling of Cancer Response to the Drug LY303511 (PDF)
Lisa Tucker-Kellogg, Duke-NUS Graduate Medical School

02.15pm - 03:00pm

Data and text mining applied to the computational study of protein interaction networks (PDF)
Miguel Andrade, Johannes-Gutenberg University of Mainz, Germany

03:00pm - 03:15pm

--- Coffee Break ---

03:15pm - 04:00pm

From Darwin to Hamilton and current omics: is there a molecular network for altruism?
Xin-Yuan Fu, National University of Singapore

04:00pm - 04:45pm

Biological networks and network biology: a cancer story (PDF)
Ali Masoudi-Nejad, University of Tehran, Iran

04:45pm - 05:00pm

Closing Remarks

Organizing Committee · Visitors and Participants · Overview · Activities · Venue

Best viewed with IE 7 and above