Institute for Mathematical Sciences                                        Programs & Activities

 

 

Sub-themes

   
 

Sequence and gene expression analysis

   
 

Population and statistical genetics

   
 

Protein interaction and clinical data analysis

   
   
   
 

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Post-Genome Knowledge Discovery
(January – June 2002)

Sub-theme 1. Sequence and gene expression analysis (Jan - Feb 2002)

 

Tutorial schedule · Workshop schedule

 

 Workshop on sequence and gene expression analysis (14 - 17 January 2002)

 

 

Workshop Schedule

 

Monday, 14 January 2002

 

Venue:  Auditorium
  Kent Ridge Digital Labs (KRDL)
21 Heng Mui Keng Terrace
Singapore 119613
 

8:45 - 9:20am Registration (1st day)
9:20 - 9:25am Welcome by Limsoon Wong, Co-Chair, Organizing Committee
9:25 - 9:30am Address by Louis Chen, Director, Institute for Mathematical Sciences
9:30 - 10:30am Bioconductor: A system for statistical analysis in functional genomics (abstract.. PDF | PS)
Robert Gentlemen Harvard University & Dana Farber Cancer Inst., USA
10:30 - 11:00am  -- Coffee Break --
11:00 - 12:00am Boolean models and algorithms for analysis gene expression data (abstract.. PDF | PS)
Tatsuya Akutsu, Kyoto University, Japan
12:00 - 2:00pm  -- Lunch Break --
2:00 - 2:40pm Some Questions on Assessing the Quality of Gene Expression Class Prediction Results (abstract.. PDF | PS)
Limsoon Wong, Kent Ridge Digital Labs (KRDL), Singapore
2:40 - 3:20pm Pathway Bioinformatics -- database, software, and discovery (abstract.. PDF | PS) (Presentation..)
Tom Tang, Hyseq Pharmaceuticals, USA
3:20 - 3:40pm  -- Coffee Break --
3:40 - 4:20pm Development of tracking tools for selected bacteria using 16S rDNA sequences: An approach based on repeating tuples and probabilities of dinucleotides (abstract.. PDF | PS)
Hemant J Purohit, NEERI, India

 

Tuesday, 15 January 2002

 

Venue:  Auditorium
  Kent Ridge Digital Labs (KRDL)
21 Heng Mui Keng Terrace
Singapore 119613
 
9:00 - 9:30am Registration (2nd day)
9:30 - 10:30am Non-random clusters of palindromes in herpesvirus genomes (abstract.. PDF | PS)
Louis Chen, Institute for Mathematical Sciences, NUS, Singapore
10:30 - 11:00am  -- Coffee Break --
11:00 - 12:00am Avoided and under-represented strings in bacterial complete genomes --- some associated fractal and combinatorics problems (abstract.. PDF | PS)
Bailin Hao, Institute of Theoretical Physics and Beijing Genomics Institute, China
12:00 - 2:00pm  -- Lunch Break --
2:00 - 2:40pm Near optimal solutions for the distinguishing string selection problem (abstract.. PDF | PS)
Lusheng Wang, City University of Hong Kong, China
2:40 - 3:20pm PatternHunter: Faster and More Sensitive Homology Search (abstract.. PDF | PS)
Bin Ma, University of Western Ontario, Canada
3:20 - 3:40pm  -- Coffee Break --
3:40 - 4:20pm Mathematical methods implemented in promoter recognition systems (abstract.. PDF | PS) (Presentation..)
Vladimir B Bajic, Kent Ridge Digital Labs (KRDL), Singpaore

 

Wednesday, 16 January 2002

 

Venue:  Auditorium
  Kent Ridge Digital Labs (KRDL)
21 Heng Mui Keng Terrace
Singapore 119613
 
9:30 - 10:30am Sequence reconstruction from nucleic-acid microarray data (abstract.. PDF | PS)
Franco P. Preparata, Brown University, USA
10:30 - 11:00am  -- Coffee Break --
11:00 - 12:00am Gene Selection for SVMs (abstract.. PDF | PS)
Sayan Mukherjee, MIT, USA
12:00 - 2:00pm  -- Lunch Break --
2:00 - 2:40pm Expression Profiling of Cancers in Asian Populations (abstract.. PDF | PS)
Patrick Tan, NCC, Singapore
2:40 - 3:20pm ArRay of Hope: Mining the Expression Profiling in Childhood Acute Lymphoblastic Leukaemia (abstract.. PDF | PS)
Allen Yeoh, NUS, Singapore
3:20 - 3:40pm  -- Coffee Break --
3:40 - 4:20pm EXCAVATOR: A new software for gene expression data analysis (abstract.. PDF | PS)
Dong Xu, Oak Ridge National Lab, USA
4:20 - 5:00pm Multiclass Tumor Classification and Outcome Prediction of Central Nervous System Embryonal Tumors (abstract.. PDF | PS) (Presentation..)
Sayan Mukherjee, MIT, USA

 

Thursday, 17 January 2002

 

Venue:  Auditorium
  Kent Ridge Digital Labs (KRDL)
21 Heng Mui Keng Terrace
Singapore 119613
 
9:30 - 10:30am Probe selection algorithm with applications in the analysis of microbial communities (abstract.. PDF | PS)
Tao Jiang, UC - Riverside, USA
10:30 - 11:00am  -- Coffee Break --
11:00 - 12:00am Topics in genome rearrangement (abstract.. PDF | PS)
David Sankoff, Univ. of Montreal
12:00 - 2:00pm  -- Lunch Break --
2:00 - 2:40pm An efficient method for inferring tandem duplication history (abstract.. PDF | PS)
Louxin Zhang, NUS, Singapore
2:40 - 3:20pm Evolutionary Monte Carlo for Protein Folding Simulations (abstract.. PDF | PS)
Faming Liang, NUS, Singapore
3:20 - 3:40pm  -- Coffee Break --
3:40 - 4:20pm Approximability of multiple sequence alignment (abstract.. PDF | PS)
Rüdiger Reischuk, Universität Lübeck, Germany
End of the workshop

 

Tutorial schedule · Workshop schedule

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